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  5. Msp_g26114

Msp_g26114


Description : pre-40S ribosomal subunit assembly factor *(UTP22) & original description: none


Gene families : OG0006078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g26114

Target Alias Description ECC score Gene Family Method Actions
AT1G63810 No alias CONTAINS InterPro DOMAIN/s: Nrap protein... 0.04 OrthoFinder output from all 47 species
Als_g15877 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Cba_g13464 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Ceric.24G063300.1 Ceric.24G063300 pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01018952001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os12g06910.1 LOC_Os12g06910 pre-40S ribosomal subunit assembly factor (UTP22) 0.03 OrthoFinder output from all 47 species
Len_g23239 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Mp6g08990.1 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.05 OrthoFinder output from all 47 species
Ore_g26767 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.05 OrthoFinder output from all 47 species
Sam_g08101 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Smo407792 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc02g085230.3.1 Solyc02g085230 pre-40S ribosomal subunit assembly factor (UTP22) 0.05 OrthoFinder output from all 47 species
Tin_g02885 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR035370 Nrap_D5 751 900
IPR035371 Nrap_D6 916 1050
IPR035369 Nrap_D4 557 748
IPR035368 Nrap_D3 384 535
IPR035367 Nrap_D2 238 378
IPR035082 Nrap_D1 99 232
No external refs found!