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  5. Msp_g20237

Msp_g20237 (PSBW)


Aliases : PSBW

Description : component *(PsbW) of PS-II complex & original description: none


Gene families : OG0002050 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g20237
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266120 PSBW,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.08 OrthoFinder output from all 47 species
AT2G30570 PSBW photosystem II reaction center W 0.12 OrthoFinder output from all 47 species
Aev_g47226 MAC3A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g04986 No alias component *(PsbW) of PS-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Als_g12837 PSBW component *(PsbW) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Als_g56334 PSBW component *(PsbW) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g15176 No alias component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g32667 PSBW component *(PsbW) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g35726 PSBW component *(PsbW) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g30138 PSBW component *(PsbW) of PS-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g41217 PSBW component *(PsbW) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene42600.t1 PSBW, Aspi01Gene42600 component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0036.g025757 PSBW component *(PsbW) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G036500.1 PSBW, Ceric.06G036500 component *(PsbW) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.32G066400.1 PSBW, Ceric.32G066400 component *(PsbW) of PS-II complex & original... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001234.7 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 OrthoFinder output from all 47 species
Dac_g08641 PSBW component *(PsbW) of PS-II complex & original description: none 0.13 OrthoFinder output from all 47 species
Dcu_g00119 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g18523 PSBW component *(PsbW) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Dcu_g41397 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06290 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g20782 PSBW component *(PsbW) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g00627 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g01886 PSBW component *(PsbW) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g04368 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01000743001 PSBW Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.09 OrthoFinder output from all 47 species
GSVIVT01036277001 PSBW Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.14 OrthoFinder output from all 47 species
LOC_Os01g56680.2 PSBW, LOC_Os01g56680 component PsbW of PS-II complex 0.1 OrthoFinder output from all 47 species
LOC_Os05g43310.1 PSBW, LOC_Os05g43310 component PsbW of PS-II complex 0.05 OrthoFinder output from all 47 species
Len_g30946 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36588 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g00156 PSBW component *(PsbW) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g03716 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431532g0010 PSBW component PsbW of PS-II complex 0.04 OrthoFinder output from all 47 species
Mp5g14190.1 PSBW component PsbW of PS-II complex 0.11 OrthoFinder output from all 47 species
Nbi_g23251 PSBW component *(PsbW) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g31677 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06296 PSBW component *(PsbW) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Pnu_g12705 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c18_6770V3.1 PSBW, Pp3c18_6770 photosystem II reaction center W 0.06 OrthoFinder output from all 47 species
Pp3c22_16330V3.1 PSBW, Pp3c22_16330 photosystem II reaction center W 0.06 OrthoFinder output from all 47 species
Ppi_g11136 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019755 PSBW component *(PsbW) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Solyc06g084050.4.1 PSBW, Solyc06g084050 component PsbW of PS-II complex 0.12 OrthoFinder output from all 47 species
Solyc09g065910.3.1 PSBW, Solyc09g065910 component PsbW of PS-II complex 0.03 OrthoFinder output from all 47 species
Spa_g01488 PSBW component *(PsbW) of PS-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g23538 PSBW component *(PsbW) of PS-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g48859 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g52574 PSBW component *(PsbW) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g24382 PSBW component *(PsbW) of PS-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Tin_g24383 PSBW component *(PsbW) of PS-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e019660_P002 PSBW, Zm00001e019660 component PsbW of PS-II complex 0.1 OrthoFinder output from all 47 species
Zm00001e027386_P002 PSBW, Zm00001e027386 component PsbW of PS-II complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 45 175
No external refs found!