Msp_g13674 (POLGAMMA2)

Aliases : POLGAMMA2

Description : DNA polymerase *(POP) & original description: none

Gene families : OG0003071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003071_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g13674

Target	Alias	Description	ECC score	Gene Family Method
AT1G50840	POLGAMMA2	polymerase gamma 2	0.02	OrthoFinder output from all 47 species
LOC_Os04g54500.1	POLGAMMA2, LOC_Os04g54500	DNA polymerase (POP)	0.02	OrthoFinder output from all 47 species
Len_g00745	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02364	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g16045	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g08131	POLGAMMA1	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Smo82310	POLGAMMA2	Cell cycle.organelle machineries.DNA replication.DNA...	0.02	OrthoFinder output from all 47 species
Zm00001e041749_P001	POLGAMMA2, Zm00001e041749	DNA polymerase (POP)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016851	magnesium chelatase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	HCCA
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071586	CAAX-box protein processing	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001098	DNA-dir_DNA_pol_A_palm_dom	953	1135
IPR001098	DNA-dir_DNA_pol_A_palm_dom	803	931
IPR002562	3'-5'_exonuclease_dom	360	582

External Links

No external refs found!