Msp_g13516 (EMB33, SUS2, EMB177, EMB14)

Aliases : EMB33, SUS2, EMB177, EMB14

Description : protein factor *(PRPF8/SUS2) of MAC spliceosome-associated complex & original description: none

Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g13516
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00089870	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.06	OrthoFinder output from all 47 species
AT1G80070	EMB33, SUS2,...	Pre-mRNA-processing-splicing factor	0.05	OrthoFinder output from all 47 species
Ala_g15277	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.06	OrthoFinder output from all 47 species
Als_g19020	EMB33, SUS2,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g29416	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.07	OrthoFinder output from all 47 species
Aob_g16557	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.04	OrthoFinder output from all 47 species
Aop_g13684	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.06	OrthoFinder output from all 47 species
Cba_g15408	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
Ceric.07G006500.1	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.137	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Dcu_g02064	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.05	OrthoFinder output from all 47 species
GSVIVT01017346001	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.08	OrthoFinder output from all 47 species
Gb_00344	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.06	OrthoFinder output from all 47 species
LOC_Os05g07050.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.05	OrthoFinder output from all 47 species
LOC_Os06g07080.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.04	OrthoFinder output from all 47 species
Len_g05452	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.07	OrthoFinder output from all 47 species
Len_g31288	EMB33, SUS2,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g02476	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.09	OrthoFinder output from all 47 species
MA_254868g0010	EMB33, SUS2,...	Pre-mRNA-processing-splicing factor 8B OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_7388g0020	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.07	OrthoFinder output from all 47 species
Mp1g12380.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Nbi_g04483	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.04	OrthoFinder output from all 47 species
Ore_g37212	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
Pir_g09836	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.04	OrthoFinder output from all 47 species
Ppi_g09482	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
Smo173603	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.05	OrthoFinder output from all 47 species
Solyc07g008880.3.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.06	OrthoFinder output from all 47 species
Spa_g12840	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.08	OrthoFinder output from all 47 species
Tin_g07648	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.05	OrthoFinder output from all 47 species
Zm00001e030094_P003	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.03	OrthoFinder output from all 47 species
Zm00001e036397_P001	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019581	Prp8_U5-snRNA-bd	1267	1400
IPR019582	RRM_spliceosomal_PrP8	1042	1132
IPR012984	PROCT	2269	2388
IPR012591	PRO8NT	93	244
IPR000555	JAMM/MPN+_dom	2157	2256
IPR019580	Prp8_U6-snRNA-bd	1499	1657
IPR021983	PRP8_domainIV	1817	2046
IPR012592	PROCN	452	857

External Links

No external refs found!

Msp_g13516 (EMB33, SUS2, EMB177, EMB14)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation