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  5. Msp_g10433

Msp_g10433


Description : RNA editing factor *(PDM2) & original description: none


Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g10433

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00085920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Ceric.11G067700.1 Ceric.11G067700 RNA editing factor *(PDM2) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01022920001 No alias Pentatricopeptide repeat-containing protein At1g10910,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g37870.4 LOC_Os01g37870 Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Len_g08792 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08999 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g040260.2.1 Solyc11g040260 Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Spa_g04732 No alias RNA editing factor *(PDM2) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e020710_P002 Zm00001e020710 Pentatricopeptide repeat-containing protein At1g10910,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MFMF GO:0004655 porphobilinogen synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 263 406
IPR033443 PPR_long 509 621
IPR002885 Pentatricopeptide_repeat 421 470
No external refs found!