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  5. Msp_g09553

Msp_g09553


Description : REM-type transcription factor & original description: none


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g09553

Target Alias Description ECC score Gene Family Method Actions
AT3G19184 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15351 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.38G010700.1 Ceric.38G010700 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g18248 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Gb_07025 No alias transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.03 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.08 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.04 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 133 222
No external refs found!