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  5. Msp_g06430

Msp_g06430


Description : non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0000988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06430

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00164p00068000 CLPR1, SVR2,... Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
AT1G09130 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.03 OrthoFinder output from all 47 species
AT1G49970 CLPR1, SVR2, NCLPP5 CLP protease proteolytic subunit 1 0.06 OrthoFinder output from all 47 species
Adi_g019566 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aev_g07767 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ala_g09550 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aop_g23397 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Azfi_s0037.g025925 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Cba_g08836 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ceric.03G040500.1 CLPR1, SVR2,... non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001420.2 No alias Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020952.49 CLPR4 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Cre14.g619100 CLPR1, SVR2, NCLPP5 Protein degradation.peptidase families.serine-type... 0.05 OrthoFinder output from all 47 species
Dac_g10911 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Dcu_g02591 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Dcu_g11508 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Ehy_g01031 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
GSVIVT01031146001 No alias Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
GSVIVT01037850001 CLPR1, SVR2, NCLPP5 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
Gb_12676 No alias non-proteolytic core component ClpR of chloroplast... 0.03 OrthoFinder output from all 47 species
LOC_Os01g16530.1 CLPR4, LOC_Os01g16530 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
LOC_Os05g51450.1 CLPR1, SVR2,... non-proteolytic core component ClpR of chloroplast... 0.05 OrthoFinder output from all 47 species
Len_g08627 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Lfl_g01473 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Lfl_g18059 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
MA_10429819g0020 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
MA_8898851g0010 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.05 OrthoFinder output from all 47 species
Nbi_g04693 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Nbi_g05257 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ore_g07323 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Pir_g12837 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Pnu_g07357 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Pnu_g12637 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Sam_g16208 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Sam_g52083 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Solyc08g077890.3.1 CLPR4, Solyc08g077890 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
Spa_g11689 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.07 OrthoFinder output from all 47 species
Zm00001e032571_P001 CLPR1, SVR2,... non-proteolytic core component ClpR of chloroplast... 0.03
  • Expression Profiles
    		•  OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source

    No GO annotation available for this sequence
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0003824 catalytic activity IEP HCCA
    MF GO:0004175 endopeptidase activity IEP HCCA
    MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
    MF GO:0004252 serine-type endopeptidase activity IEP HCCA
    BP GO:0006508 proteolysis IEP HCCA
    MF GO:0008233 peptidase activity IEP HCCA
    MF GO:0008236 serine-type peptidase activity IEP HCCA
    MF GO:0010181 FMN binding IEP HCCA
    MF GO:0016491 oxidoreductase activity IEP HCCA
    MF GO:0017171 serine hydrolase activity IEP HCCA
    MF GO:0140657 ATP-dependent activity IEP HCCA
    InterPro domains Description Start Stop
    IPR023562 ClpP/TepA 141 320
    No external refs found!