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  5. Msp_g06249

Msp_g06249 (PSBA)


Aliases : PSBA

Description : component *(PsbA/D1) of PS-II reaction center complex & original description: none


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06249
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00011330 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder output from all 47 species
AMTR_s00102p00106890 PSBD,... Photosystem II D2 protein OS=Amborella trichopoda 0.02 OrthoFinder output from all 47 species
AMTR_s00172p00027480 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.02 OrthoFinder output from all 47 species
AMTR_s00172p00030370 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.02 OrthoFinder output from all 47 species
AMTR_s00172p00038240 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.02 OrthoFinder output from all 47 species
AMTR_s00172p00040120 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.02 OrthoFinder output from all 47 species
AMTR_s00390p00002060 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder output from all 47 species
ATCG00020 PSBA photosystem II reaction center protein A 0.03 OrthoFinder output from all 47 species
Aev_g03797 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.02 OrthoFinder output from all 47 species
Als_g05104 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Als_g08173 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Cba_g74869 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Dcu_g24049 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Dde_g00539 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Ehy_g02156 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01010924001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01016441001 PSBA Photosystem II protein D1 OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
GSVIVT01029661001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
Gb_03955 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.02 OrthoFinder output from all 47 species
Gb_06825 PSBD no description available(sp|q85ac9|psbd_antag : 421.0) 0.02 OrthoFinder output from all 47 species
Gb_09035 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.02 OrthoFinder output from all 47 species
Gb_18604 PSBA Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.02 OrthoFinder output from all 47 species
LOC_Os04g16872.1 PSBD, LOC_Os04g16872 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
LOC_Os10g21192.1 PSBA, LOC_Os10g21192 component PsbA/D1 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
LOC_Os12g19580.1 PSBA, LOC_Os12g19580 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Len_g50353 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Lfl_g02222 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Nbi_g06167 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g00529 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g01211 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001231 PSBD not classified & original description: CDS=1-297 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002256 PSBC not classified & original description: CDS=1-531 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015242 PSBA not classified & original description: CDS=1-252 0.03 OrthoFinder output from all 47 species
Sam_g01382 No alias component *(PsbD/D2) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Sam_g05154 No alias component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Smo137879 PSBD Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
Smo139195 PSBA Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.04 OrthoFinder output from all 47 species
Smo236852 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.05 OrthoFinder output from all 47 species
Solyc00g230080.1.1 PSBD, Solyc00g230080 Photosystem II D2 protein OS=Tupiella akineta... 0.04 OrthoFinder output from all 47 species
Solyc00g500130.1.1 PSBA, Solyc00g500130 component PsbA/D1 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
Solyc00g500200.1.1 PSBA, Solyc00g500200 component PsbA/D1 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
Solyc00g500296.1.1 PSBA, Solyc00g500296 component PsbA/D1 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
Solyc00g500329.1.1 PSBA, Solyc00g500329 component PsbA/D1 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
Solyc12g039030.1.1 PSBA, Solyc12g039030 Photosystem II protein D1 OS=Oltmannsiellopsis viridis... 0.05 OrthoFinder output from all 47 species
Tin_g01230 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Tin_g12149 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Zm00001e015953_P001 PSBD, Zm00001e015953 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
Zm00001e036844_P001 PSBA, Zm00001e036844 Photosystem II protein D1 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Zm00001e042113_P001 PSBA, Zm00001e042113 Photosystem II protein D1 OS=Zea mays... 0.04 OrthoFinder output from all 47 species
Zm00001e042176_P001 PSBA, Zm00001e042176 component PsbA/D1 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
Zm00001e042427_P001 PSBD, Zm00001e042427 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 28 327
No external refs found!