Msp_g06036

Description : E4 polyubiquitination factor *(UFD2) & original description: none

Gene families : OG0003921 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003921_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g06036

Target	Alias	Description	ECC score	Gene Family Method
Adi_g004534	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g29326	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g17517	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.11G013400.1	Ceric.11G013400	E4 polyubiquitination factor *(UFD2) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000076.105	No alias	Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01011484001	No alias	Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_15414	No alias	E4 multiubiquitination enzyme (UFD2)	0.05	OrthoFinder output from all 47 species
Lfl_g02372	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.03	OrthoFinder output from all 47 species
MA_24841g0010	No alias	Probable ubiquitin conjugation factor E4 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp6g01260.1	No alias	E4 multiubiquitination enzyme (UFD2)	0.02	OrthoFinder output from all 47 species
Ore_g08916	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e002031_P002	Zm00001e002031	E4 multiubiquitination enzyme (UFD2)	0.03	OrthoFinder output from all 47 species
Zm00001e038059_P002	Zm00001e038059	E4 multiubiquitination enzyme (UFD2)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	None	Extended
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	955	1025
IPR019474	Ub_conjug_fac_E4_core	260	938

External Links

No external refs found!

Msp_g06036

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation