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  5. Msp_g04528

Msp_g04528 (RPN1A, ATRPN1A)


Aliases : RPN1A, ATRPN1A

Description : regulatory component *(RPN1) of 26S proteasome & original description: none


Gene families : OG0003700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003700_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g04528
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242820 RPN1A, ATRPN1A,... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Adi_g022424 RPN1A, ATRPN1A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G015600.1 RPN1A, ATRPN1A,... regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cre16.g676197 RPN1B, ATRPN1B Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Sam_g09731 No alias regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Solyc07g053650.4.1 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Tin_g10608 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Zm00001e013651_P001 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e025223_P001 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR040892 RPN1_N 47 350
IPR002015 Proteasome/cyclosome_rpt 482 513
IPR041433 RPN1_C 832 885
No external refs found!