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  5. Tin_g45301

Tin_g45301 (PARL1, ATNUC-L1, NUC-L1)


Aliases : PARL1, ATNUC-L1, NUC-L1

Description : regulatory protein *(NCL) of rRNA transcription & original description: none


Gene families : OG0002719 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002719_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g45301

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00190880 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Aev_g15247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g23892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G054400.1 Ceric.08G054400 not classified & original description: pacid=50638201... 0.03 OrthoFinder output from all 47 species
Dcu_g23055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024823001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_01281 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10426020g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_109416g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g42721 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07582 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g06792 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33275 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g37822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32815 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g031650.3.1 Solyc09g031650 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g04875 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g54155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 1265 1332
IPR000504 RRM_dom 1382 1441
No external refs found!