Tin_g44354

Description : component *(SMG8) of SMG1C protein kinase complex & original description: none

Gene families : OG0006988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006988_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g44354

Target	Alias	Description	ECC score	Gene Family Method
Adi_g104723	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Aev_g09311	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Ala_g21960	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.04	OrthoFinder output from all 47 species
Cba_g04742	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.04	OrthoFinder output from all 47 species
Dac_g16675	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g17378	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
LOC_Os02g57780.1	LOC_Os02g57780	component SMG8 of SMG1C protein kinase complex	0.03	OrthoFinder output from all 47 species
Mp4g12170.1	No alias	component SMG8 of SMG1C protein kinase complex	0.02	OrthoFinder output from all 47 species
Ore_g37236	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Pir_g63906	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.04	OrthoFinder output from all 47 species
Spa_g07639	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019354	SMG8/SMG9	699	871
IPR019354	SMG8/SMG9	144	326
IPR019354	SMG8/SMG9	1245	1371
IPR019354	SMG8/SMG9	874	939

External Links

No external refs found!

Tin_g44354

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation