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  5. Tin_g31839

Tin_g31839 (AFP3)


Aliases : AFP3

Description : not classified & original description: none


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g31839
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00036030 NINJA,... RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.02 OrthoFinder output from all 47 species
AT1G69260 AFP1 ABI five binding protein 0.03 OrthoFinder output from all 47 species
AT3G29575 AFP3 ABI five binding protein 3 0.11 OrthoFinder output from all 47 species
Aev_g20362 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35216 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Ala_g27252 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.01 OrthoFinder output from all 47 species
Als_g57739 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37245.t1 NINJA, Aspi01Gene37245 transcriptional co-repressor *(AFP/NINJA) & original... 0.02 OrthoFinder output from all 47 species
Cba_g26778 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g01983 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16257 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g07044 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008104001 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.01 OrthoFinder output from all 47 species
GSVIVT01012225001 AFP2 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
LOC_Os03g30570.1 AFP2, LOC_Os03g30570 transcriptional co-repressor (AFP/NINJA) 0.06 OrthoFinder output from all 47 species
LOC_Os07g41160.1 AFP3, LOC_Os07g41160 transcriptional co-repressor (AFP/NINJA) 0.04 OrthoFinder output from all 47 species
Len_g09615 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16334 NINJA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28105 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20542 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01376 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.05 OrthoFinder output from all 47 species
Pir_g50193 AFP2 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g32749 NINJA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002066 NINJA not classified & original description: CDS=65-1531 0.01 OrthoFinder output from all 47 species
Smo446487 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.01 OrthoFinder output from all 47 species
Solyc04g005380.3.1 AFP2, Solyc04g005380 transcriptional co-repressor (AFP/NINJA) 0.09 OrthoFinder output from all 47 species
Solyc05g012210.4.1 AFP2, Solyc05g012210 transcriptional co-repressor (AFP/NINJA) 0.1 OrthoFinder output from all 47 species
Spa_g02907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g07383 NINJA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e026492_P001 NINJA, Zm00001e026492 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species
Zm00001e038719_P006 AFP2, Zm00001e038719 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 824 854
No external refs found!