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  5. Tin_g28325

Tin_g28325 (SCN1)


Aliases : SCN1

Description : guanine nucleotide dissociation inhibitor *(RopGDI) & original description: none


Gene families : OG0001513 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001513_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g28325
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00173830 SCN1,... Multi-process regulation.Rop GTPase regulatory... 0.02 OrthoFinder output from all 47 species
Adi_g015842 No alias guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Aev_g16933 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Ala_g16981 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.05 OrthoFinder output from all 47 species
Cba_g15558 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Ceric.31G032800.1 SCN1, Ceric.31G032800 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.05 OrthoFinder output from all 47 species
Ehy_g04328 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01030419001 SCN1 Multi-process regulation.Rop GTPase regulatory... 0.06 OrthoFinder output from all 47 species
Lfl_g37795 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.06 OrthoFinder output from all 47 species
MA_205752g0010 SCN1 guanine nucleotide dissociation inhibitor (RopGDI) 0.02 OrthoFinder output from all 47 species
Mp1g02130.1 SCN1 guanine nucleotide dissociation inhibitor (RopGDI) 0.02 OrthoFinder output from all 47 species
Msp_g39473 No alias guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Ppi_g00513 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.04 OrthoFinder output from all 47 species
Sam_g25794 No alias guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.02 OrthoFinder output from all 47 species
Sam_g49225 No alias guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Sam_g50701 No alias guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0007266 Rho protein signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000406 Rho_GDI 81 134
IPR000406 Rho_GDI 162 297
No external refs found!