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  5. Tin_g28150

Tin_g28150


Description : component *(CWC22) of MAC spliceosome-associated complex & original description: none


Gene families : OG0004452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g28150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00125760 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G80930 No alias MIF4G domain-containing protein / MA3 domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g056632 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Ala_g25591 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Als_g57308 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Aop_g08815 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.07 OrthoFinder output from all 47 species
Ceric.1Z119600.1 Ceric.1Z119600 component *(CWC22) of MAC spliceosome-associated complex... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000169.28 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g04879 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Ehy_g09084 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
GSVIVT01026760001 No alias No description available 0.03 OrthoFinder output from all 47 species
Mp2g22570.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g20824 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.05 OrthoFinder output from all 47 species
Nbi_g17978 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Ore_g44880 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Sam_g50425 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Spa_g10884 No alias component *(CWC22) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Zm00001e039666_P001 Zm00001e039666 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 529 709
IPR003891 Initiation_fac_eIF4g_MI 820 926
No external refs found!