Tin_g26519


Description : component *(eL34) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g26519

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00260490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AMTR_s00010p00260730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AT1G26880 No alias Ribosomal protein L34e superfamily protein 0.1 OrthoFinder output from all 47 species
AT1G69620 RPL34 ribosomal protein L34 0.12 OrthoFinder output from all 47 species
AT3G28900 No alias Ribosomal protein L34e superfamily protein 0.11 OrthoFinder output from all 47 species
Adi_g023873 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g049423 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g101365 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g107643 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g128643 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g27528 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g05903 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ala_g19937 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aob_g25976 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g25989 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aspi01Gene60347.t1 Aspi01Gene60347 component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029897 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0094.g043410 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0225.g058934 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.29G078700.1 Ceric.29G078700 component *(eL34) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.34G068800.1 Ceric.34G068800 component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000632.3 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Cre16.g661050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Dac_g02443 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g20175 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g28753 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dde_g15490 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01019985001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Gb_36060 No alias component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os08g06040.1 LOC_Os08g06040 component RPL34 of LSU proteome component 0.11 OrthoFinder output from all 47 species
LOC_Os08g33920.1 LOC_Os08g33920 component RPL34 of LSU proteome component 0.06 OrthoFinder output from all 47 species
LOC_Os09g24690.1 LOC_Os09g24690 component RPL34 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Len_g06750 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Lfl_g31825 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_109553g0010 No alias component RPL34 of LSU proteome component 0.06 OrthoFinder output from all 47 species
MA_175574g0010 No alias component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_7581523g0010 No alias component RPL34 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp4g17040.1 No alias component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Msp_g09133 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g20020 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ore_g10506 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g66658 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_2940V3.1 RPL34, Pp3c11_2940 Ribosomal protein L34e superfamily protein 0.05 OrthoFinder output from all 47 species
Pp3c1_1800V3.1 RPL34, Pp3c1_1800 Ribosomal protein L34e superfamily protein 0.04 OrthoFinder output from all 47 species
Pp3c25_11980V3.1 Pp3c25_11980 Ribosomal protein L34e superfamily protein 0.06 OrthoFinder output from all 47 species
Pp3c2_34570V3.1 Pp3c2_34570 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c7_21380V3.1 Pp3c7_21380 Ribosomal protein L34e superfamily protein 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000708 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05824 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g20232 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g23859 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g35945 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo113433 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Solyc05g007560.3.1 Solyc05g007560 component RPL34 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Solyc06g069860.4.1 Solyc06g069860 component RPL34 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Spa_g28558 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g37008 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Zm00001e004116_P001 Zm00001e004116 component RPL34 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Zm00001e021733_P002 Zm00001e021733 component RPL34 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Zm00001e022460_P001 Zm00001e022460 component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e034114_P001 Zm00001e034114 component RPL34 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Zm00001e040229_P001 Zm00001e040229 component RPL34 of LSU proteome component 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 31 126
No external refs found!