Tin_g23260 (SOC1, AGL20, ATSOC1)

Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g23260

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00190220	AGL4, SEP2,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT4G37940	AGL21	AGAMOUS-like 21	0.02	OrthoFinder output from all 47 species
Adi_g013558	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04765	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11269	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g28879	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05477	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11883	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g16338	AGL13	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g44649	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g51471	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11796	AGL104	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44620.t1	AGL6, Aspi01Gene44620	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene49761.t1	AGL15, Aspi01Gene49761	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0043.g027077	AGL30	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0073.g037211	AGL104	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0116.g046386	AGL65	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s2186.g109823	No alias	not classified & original description: CDS=5-496	0.03	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Dde_g22677	AGL65	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g50123	AGL3, SEP4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01012110001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01025945001	STK, AGL11	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Gb_12581	AGL6	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Ore_g09699	GL19, AGL19	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g15427	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g19814	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g14875	AGL65	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g33045	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g41504	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g61246	AGL21	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018504	AGL42	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025791	AGL65	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g18792	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18903	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26914	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo437868	AGL29	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc11g010570.2.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Spa_g16602	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g45506	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g20318	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e011565_P001	AGL7, AP1, Zm00001e011565	MADS-box transcription factor 15 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Zm00001e034629_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008252	nucleotidase activity	IEP	HCCA
MF	GO:0008253	5'-nucleotidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009166	nucleotide catabolic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009264	deoxyribonucleotide catabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	157	204
IPR002487	TF_Kbox	234	317

External Links

No external refs found!

Tin_g23260 (SOC1, AGL20, ATSOC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation