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  5. Tin_g21600

Tin_g21600


Description : component *(uL30) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g21600
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00107780 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00187310 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00164400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AT1G80750 No alias Ribosomal protein L30/L7 family protein 0.03 OrthoFinder output from all 47 species
AT2G01250 No alias Ribosomal protein L30/L7 family protein 0.19 OrthoFinder output from all 47 species
Adi_g041735 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g099683 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g26611 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g00722 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ala_g08610 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g30462 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Als_g61623 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aob_g07617 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g10797 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007872 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048841 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0870.g090589 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s4066.g117878 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g08001 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.11G041100.1 Ceric.11G041100 component *(uL30) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Ceric.34G033800.1 Ceric.34G033800 component *(uL30) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020909.42 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Cre12.g537800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Dac_g10886 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Dcu_g00598 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ehy_g21688 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01029288001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01029655001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
GSVIVT01034230001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Gb_20650 No alias component RPL7 of LSU proteome component 0.14 OrthoFinder output from all 47 species
LOC_Os04g51630.1 LOC_Os04g51630 component RPL7 of LSU proteome component 0.11 OrthoFinder output from all 47 species
LOC_Os08g13690.1 LOC_Os08g13690 component RPL7 of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os08g42920.1 LOC_Os08g42920 component RPL7 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Lfl_g25317 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g31973 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g36735 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10428203g0010 No alias component RPL7 of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_109845g0010 No alias component RPL7 of LSU proteome component 0.12 OrthoFinder output from all 47 species
MA_47548g0010 No alias component RPL7 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Msp_g04692 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Msp_g33450 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g11275 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g33373 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g11555 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g57778 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g59807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c11_13640V3.1 Pp3c11_13640 Ribosomal protein L30/L7 family protein 0.01 OrthoFinder output from all 47 species
Pp3c1_39470V3.1 Pp3c1_39470 Ribosomal protein L30/L7 family protein 0.12 OrthoFinder output from all 47 species
Pp3c2_1610V3.1 Pp3c2_1610 Ribosomal protein L30/L7 family protein 0.04 OrthoFinder output from all 47 species
Pp3c2_5820V3.1 Pp3c2_5820 Ribosomal protein L30/L7 family protein 0.11 OrthoFinder output from all 47 species
Ppi_g12581 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g20280 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015032 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g06365 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g10126 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g10127 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g13945 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g17394 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27105 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g31082 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g43550 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g47015 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g49407 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo103994 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc06g068400.3.1 Solyc06g068400 component RPL7 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc08g075090.4.1 Solyc08g075090 transcription factor (bHLH). component RPL7 of LSU... 0.09 OrthoFinder output from all 47 species
Spa_g07368 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g43297 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e003731_P002 Zm00001e003731 component RPL7 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e007015_P002 Zm00001e007015 component RPL7 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Zm00001e022294_P001 Zm00001e022294 component RPL7 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Zm00001e040072_P002 Zm00001e040072 component RPL7 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e041593_P001 Zm00001e041593 component RPL7 of LSU proteome component 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0070469 respirasome IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR016082 Ribosomal_L30_ferredoxin-like 89 139
IPR012988 Ribosomal_L30_N 13 84
No external refs found!