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  5. Tin_g20494

Tin_g20494


Description : not classified & original description: none


Gene families : OG0004684 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004684_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g20494

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00192630 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT2G25730 No alias unknown protein; Has 157 Blast hits to 144 proteins in... 0.03 OrthoFinder output from all 47 species
Aev_g01617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07096 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g01996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g10942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0682.g082027 No alias not classified & original description: CDS=2223-8297 0.03 OrthoFinder output from all 47 species
Cba_g02120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z229800.1 Ceric.1Z229800 not classified & original description: pacid=50637151... 0.03 OrthoFinder output from all 47 species
Ceric.25G067100.1 Ceric.25G067100 not classified & original description: pacid=50593284... 0.05 OrthoFinder output from all 47 species
Dcu_g09637 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
GSVIVT01035749001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_14991 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os01g40990.2 LOC_Os01g40990 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g03524 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10426096g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g19740.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g12888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002240 No alias not classified & original description: CDS=107-7096 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003417 No alias not classified & original description: CDS=1-528 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015864 No alias not classified & original description: CDS=131-700 0.02 OrthoFinder output from all 47 species
Smo443317 No alias Disease resistance response protein 206 OS=Pisum sativum 0.06 OrthoFinder output from all 47 species
Zm00001e020594_P001 Zm00001e020594 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!