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  5. Tin_g12919

Tin_g12919


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12919

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00004p00121730 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00082900 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g28452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68576 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g37363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.05 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.05 OrthoFinder output from all 47 species
Ceric.20G007500.1 Ceric.20G007500 not classified & original description: pacid=50566839... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05040 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g07847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g10280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436637g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_92056g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g48141 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16078 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023957 No alias not classified & original description: CDS=113-2587 0.03 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g15243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007365_P001 Zm00001e007365 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 245 313
IPR000504 RRM_dom 325 387
IPR000504 RRM_dom 420 481
No external refs found!