Tin_g12840 (TRZ4)

Aliases : TRZ4

Description : EC_3.1 hydrolase acTing on ester bond & original description: none

Gene families : OG0002827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002827_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g12840

Target	Alias	Description	ECC score	Gene Family Method
AT3G16260	TRZ4	tRNAse Z4	0.03	OrthoFinder output from all 47 species
Msp_g47135	TRZ3	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019311	TRZ4	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027794	tRNase_Z_dom	92	143

External Links

No external refs found!