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  5. Tin_g12195

Tin_g12195


Description : E3 ubiquiTin ligase *(SAUL) & original description: none


Gene families : OG0000782 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000782_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12195
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00118190 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Ala_g06698 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g17662 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13185.t1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015762 No alias E3 ubiquitin ligase *(SAUL) & original description: CDS=1-3144 0.06 OrthoFinder output from all 47 species
Ceric.05G001500.1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.08G057000.1 Ceric.08G057000 E3 ubiquitin ligase *(SAUL) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G068400.1 PUB26, Ceric.13G068400 E3 ubiquitin ligase *(SAUL) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.25G052400.1 Ceric.25G052400 E3 ubiquitin ligase *(SAUL) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g09678 No alias E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10118 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12042 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00928 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00947 PUB9, ATPUB9 E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g01743 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000832001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01018088001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
GSVIVT01027197001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72000.1 LOC_Os01g72000 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp1g08920.1 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp1g26780.1 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Pir_g09769 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025808 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: CDS=139-3045 0.03 OrthoFinder output from all 47 species
Solyc01g068490.4.1 Solyc01g068490 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Solyc01g096200.4.1 Solyc01g096200 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Solyc03g082690.3.1 Solyc03g082690 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc09g083060.4.1 Solyc09g083060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g29203 PUB44, SAUL1, ATPUB44 E3 ubiquiTin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018652_P001 Zm00001e018652 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 264 330
IPR000225 Armadillo 571 613
IPR000225 Armadillo 531 569
No external refs found!