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  5. Tin_g11999

Tin_g11999


Description : not classified & original description: none


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11999

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00103870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g14343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14510 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene71777.t1 Aspi01Gene71777 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0021.g015637 No alias not classified & original description: CDS=1-2424 0.03 OrthoFinder output from all 47 species
Ceric.09G038600.1 Ceric.09G038600 not classified & original description: pacid=50586912... 0.04 OrthoFinder output from all 47 species
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dac_g39654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13828 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Lfl_g05640 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_40229g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_956864g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g27091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59335 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g13644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 230 400
IPR001650 Helicase_C 438 546
No external refs found!