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  5. Tin_g11299

Tin_g11299


Description : translation termination factor *(eRF3) & original description: none


Gene families : OG0004213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004213_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11299
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Aev_g20715 No alias translation termination factor *(eRF3) & original... 0.02 OrthoFinder output from all 47 species
Aop_g21103 No alias translation termination factor *(eRF3) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0002.g001151 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
Cba_g04001 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G096500.1 Ceric.02G096500 translation termination factor *(eRF3) & original... 0.06 OrthoFinder output from all 47 species
Cre06.g284750 No alias Protein biosynthesis.translation termination.eRF3... 0.03 OrthoFinder output from all 47 species
Dcu_g06375 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Dde_g00750 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Len_g35299 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
MA_10428053g0010 No alias Elongation factor 1-alpha OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species
MA_10429223g0010 No alias Elongation factor 1-alpha OS=Vicia faba... 0.02 OrthoFinder output from all 47 species
Spa_g00747 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e040640_P002 Zm00001e040640 eRF3 peptide release factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 439 549
IPR000795 T_Tr_GTP-bd_dom 123 341
IPR004161 EFTu-like_2 366 433
No external refs found!