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  5. Tin_g10145

Tin_g10145


Description : deadenylase component *(CCR4) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Tin_g10145

Target Alias Description ECC score Gene Family Method Actions
Ceric.03G018800.1 Ceric.03G018800 deadenylase component *(CCR4) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ceric.1Z049500.1 Ceric.1Z049500 deadenylase component *(CCR4) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Cre11.g475900 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g08856 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
LOC_Os10g27230.3 LOC_Os10g27230 deadenylase component CCR4 of CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Lfl_g06181 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sam_g39886 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sam_g39887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo270348 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Spa_g18132 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g26860 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 249 578
IPR031615 Zfn-C6H2 71 109
No external refs found!