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  5. Tin_g08857

Tin_g08857


Description : not classified & original description: none


Gene families : OG0007936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007936_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g08857
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00259530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species
Cba_g04055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os09g29790.1 LOC_Os09g29790 Pentatricopeptide repeat-containing protein At1g76280... 0.03 OrthoFinder output from all 47 species
Mp7g13850.1 No alias Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species
Nbi_g07630 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 421 538
IPR002885 Pentatricopeptide_repeat 118 139
IPR002885 Pentatricopeptide_repeat 651 709
IPR002885 Pentatricopeptide_repeat 218 247
No external refs found!