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  5. Tin_g06956

Tin_g06956


Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer & original description: none


Gene families : OG0007954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06956
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Als_g18360 No alias small subunit of ribulose-1,5-bisphosphat... 0.13 OrthoFinder output from all 47 species
Aop_g62345 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Aop_g68784 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Cba_g36893 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Dac_g15046 No alias small subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Dac_g35392 No alias small subunit of ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Dcu_g06004 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Dde_g09063 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Dde_g23301 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Dde_g46381 No alias small subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
Lfl_g04457 No alias small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Msp_g11427 No alias small subunit of ribulose-1,5-bisphosphat... 0.15 OrthoFinder output from all 47 species
Msp_g17648 No alias small subunit of ribulose-1,5-bisphosphat... 0.13 OrthoFinder output from all 47 species
Msp_g25590 No alias small subunit of ribulose-1,5-bisphosphat... 0.15 OrthoFinder output from all 47 species
Pnu_g28032 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!