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  5. Tin_g04119

Tin_g04119 (POK, TTD8, ATVPS52)


Aliases : POK, TTD8, ATVPS52

Description : component *(VPS52/POK) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none


Gene families : OG0004170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04119
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT1G71270 POK, TTD8, ATVPS52 Vps52 / Sac2 family 0.03 OrthoFinder output from all 47 species
Adi_g114583 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Als_g22344 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Aob_g16191 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Aop_g06543 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ceric.05G039600.1 POK, TTD8,... component *(VPS52/POK) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Dcu_g01774 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
GSVIVT01012102001 POK, TTD8, ATVPS52 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Lfl_g03261 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Mp6g21530.1 POK, TTD8, ATVPS52 component VPS52/POK of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Nbi_g16706 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Pir_g08942 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Smo235014 POK, TTD8, ATVPS52 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc02g094090.4.1 POK, TTD8,... component VPS52/POK of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Spa_g15916 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007258 Vps52 152 652
No external refs found!