Tin_g02402

Description : component *(uL24c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g02402
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
AT5G54600	No alias	Translation protein SH3-like family protein	0.09	OrthoFinder output from all 47 species
Adi_g019582	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g04734	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aop_g00183	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Azfi_s0006.g010426	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cba_g02325	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.33G048800.1	Ceric.33G048800	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000455.16	No alias	No description available	0.03	OrthoFinder output from all 47 species
Cre16.g652550	No alias	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Ehy_g22263	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01014572001	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Gb_13209	No alias	50S ribosomal protein L24, chloroplastic OS=Spinacia...	0.05	OrthoFinder output from all 47 species
LOC_Os06g46930.1	LOC_Os06g46930	component psRPL24 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Len_g05147	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Lfl_g05272	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10018366g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp3g07850.1	No alias	component psRPL24 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Msp_g18519	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g00588	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ore_g05626	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c15_17530V3.1	Pp3c15_17530	Translation protein SH3-like family protein	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g08486	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g08487	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Solyc07g063960.3.1	Solyc07g063960	component psRPL24 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g00224	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e013043_P001	Zm00001e013043	component psRPL24 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003256	Ribosomal_L24	118	181
IPR005824	KOW	85	116

External Links

No external refs found!

Tin_g02402

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation