Tin_g02198


Description : not classified & original description: none


Gene families : OG0003321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003321_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g02198
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00132870 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT3G47890 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.03 OrthoFinder output from all 47 species
AT3G47910 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.05 OrthoFinder output from all 47 species
Adi_g058350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g080721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04590 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22460 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g14015 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene09610.t1 Aspi01Gene09610 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0327.g065237 No alias not classified & original description: CDS=1-5397 0.04 OrthoFinder output from all 47 species
Ceric.1Z194000.1 Ceric.1Z194000 not classified & original description: pacid=50618972... 0.06 OrthoFinder output from all 47 species
Cre12.g508250 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g28933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07008 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g16619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008079001 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os03g06950.1 LOC_Os03g06950 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g49533 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g12618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_46922g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g13542 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g05015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13760 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g24494 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g113370.3.1 Solyc03g113370 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc06g071120.3.1 Solyc06g071120 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e039017_P003 Zm00001e039017 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR006865 DUF629 364 925
IPR006866 DUF627_N 101 204
IPR001394 Peptidase_C19_UCH 1437 1758
No external refs found!