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  5. Tin_g01889

Tin_g01889


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g01889

Target Alias Description ECC score Gene Family Method Actions
Adi_g018223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08756 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g00969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.05 OrthoFinder output from all 47 species
Ceric.25G014900.1 Ceric.25G014900 not classified & original description: pacid=50594354... 0.01 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.04 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.05 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.04 OrthoFinder output from all 47 species
Dcu_g02839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g07546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g11399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000825 No alias not classified & original description: CDS=373-1662 0.03 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16749 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22004 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g48472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e028338_P001 Zm00001e028338 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 303 360
IPR000504 RRM_dom 16 73
IPR000504 RRM_dom 108 167
No external refs found!