1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g00604

Tin_g00604 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00604

Target Alias Description ECC score Gene Family Method Actions
AT4G02430 SR34b, At-SR34b RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Als_g12032 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20395 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05960 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13216 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G062100.1 SR30, ATSRP30,... RNA splicing factor *(SR30/34) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000857.20 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Dac_g00635 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g39694 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01038636001 At-SR34a, SR34a, SRp34a RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Gb_21063 SR34b, At-SR34b SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g22380.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Len_g20957 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02704 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02953 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03118 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18787 No alias RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Smo97566 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g04177 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003951 NAD+ kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006741 NADP biosynthetic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 176
IPR000504 RRM_dom 9 75
No external refs found!