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  5. Tin_g00552

Tin_g00552 (ATHM1, THM1, TRX-M1, ATM1)


Aliases : ATHM1, THM1, TRX-M1, ATM1

Description : thioredoxin *(TRX-M) & original description: none


Gene families : OG0001012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00552
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00016000 ATHM2,... Redox homeostasis.chloroplast redox homeostasis.M-type... 0.07 OrthoFinder output from all 47 species
AT1G03680 ATHM1, THM1, TRX-M1, ATM1 thioredoxin M-type 1 0.05 OrthoFinder output from all 47 species
AT3G15360 ATHM4, TRX-M4, ATM4 thioredoxin M-type 4 0.03 OrthoFinder output from all 47 species
Adi_g086491 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g107265 ATHM4, TRX-M4, ATM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32022 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09870 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12040 ATHM2 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g48830 ATHM2 thioredoxin *(TRX-M) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g58971 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04875 ATHM2 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g08794 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g24176 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g39548 ATHM2 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g11048 ATHM2 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene06604.t1 ATHM1, THM1,... thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11662.t1 ATHM2, Aspi01Gene11662 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene35886.t2 ATHM2, Aspi01Gene35886 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0087.g042425 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=1-594 0.04 OrthoFinder output from all 47 species
Azfi_s0144.g051537 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: CDS=12-806 0.03 OrthoFinder output from all 47 species
Cba_g19197 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g23725 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.11 OrthoFinder output from all 47 species
Cba_g34617 ATHM2 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G062900.1 ATHM2, Ceric.09G062900 thioredoxin *(TRX-M) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.23G041700.1 ATHM2, Ceric.23G041700 thioredoxin *(TRX-M) & original description:... 0.15 OrthoFinder output from all 47 species
Ceric.30G036000.1 ATHM1, THM1,... thioredoxin *(TRX-M) & original description:... 0.14 OrthoFinder output from all 47 species
Dac_g01349 ATHM2 thioredoxin *(TRX-M) & original description: none 0.17 OrthoFinder output from all 47 species
Dcu_g06755 ATHM2 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14399 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21277 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49300 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02608 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.11 OrthoFinder output from all 47 species
Dde_g23261 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03185 ATHM2 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g08153 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09639 ATHM2 thioredoxin *(TRX-M) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010012001 ATHM4, TRX-M4, ATM4 Redox homeostasis.chloroplast redox homeostasis.M-type... 0.08 OrthoFinder output from all 47 species
Gb_00914 ATHM2 M-type thioredoxin 0.03 OrthoFinder output from all 47 species
Gb_31181 ATHM2 M-type thioredoxin 0.05 OrthoFinder output from all 47 species
LOC_Os12g08730.1 ATHM2, LOC_Os12g08730 M-type thioredoxin 0.05 OrthoFinder output from all 47 species
Len_g07374 ATHM2 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g09823 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Len_g16078 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g21827 ATHM2 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g19591 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
MA_474303g0010 ATHM2 M-type thioredoxin 0.04 OrthoFinder output from all 47 species
Mp4g18950.1 ATHM1, THM1, TRX-M1, ATM1 M-type thioredoxin 0.08 OrthoFinder output from all 47 species
Msp_g12620 ATHM2 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g19290 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10092 ATHM2 thioredoxin *(TRX-M) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g01815 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10112 ATHM2 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Pnu_g10809 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c25_2880V3.1 ATHM1, THM1,... thioredoxin M-type 1 0.03 OrthoFinder output from all 47 species
Ppi_g02691 ATHM2 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Ppi_g22064 ATHM4, TRX-M4, ATM4 thioredoxin *(TRX-M) & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g07636 No alias thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g07637 No alias thioredoxin *(TRX-M) & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g24018 No alias thioredoxin *(TRX-M) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc10g006970.3.1 ATHM4, TRX-M4,... M-type thioredoxin 0.05 OrthoFinder output from all 47 species
Solyc12g013810.2.1 ATHM4, TRX-M4,... M-type thioredoxin 0.06 OrthoFinder output from all 47 species
Spa_g06831 ATHM2 thioredoxin *(TRX-M) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19071 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g52025 ATHM1, THM1, TRX-M1, ATM1 thioredoxin *(TRX-M) & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e018385_P001 ATHM4, TRX-M4,... M-type thioredoxin 0.06 OrthoFinder output from all 47 species
Zm00001e039586_P001 ATHM2, Zm00001e039586 M-type thioredoxin 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 88 185
No external refs found!