Tin_g00494

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g00494
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00109050	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AT2G18020	EMB2296	Ribosomal protein L2 family	0.12	OrthoFinder output from all 47 species
AT4G36130	No alias	Ribosomal protein L2 family	0.14	OrthoFinder output from all 47 species
Adi_g047038	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Adi_g086062	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g113531	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aev_g02982	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g12035	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g63414	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g12168	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Cba_g22463	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g37121	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.30G024600.1	Ceric.30G024600	component *(uL2) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020965.22	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Cre12.g535851	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
Dac_g02131	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Dcu_g05184	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01014552001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
LOC_Os12g38000.1	LOC_Os12g38000	component RPL8 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Len_g18444	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g27953	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10431163g0010	No alias	component RPL8 of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_219740g0010	No alias	component RPL8 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_383747g0010	No alias	component RPL8 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp7g01860.1	EMB2296	component RPL8 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Mp7g08730.1	EMB2296	component RPL8 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Msp_g07633	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Nbi_g25715	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ore_g18847	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g12813	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c12_10200V3.1	EMB2296, Pp3c12_10200	Ribosomal protein L2 family	0.06	OrthoFinder output from all 47 species
Pp3c13_23630V3.1	EMB2296, Pp3c13_23630	Ribosomal protein L2 family	0.06	OrthoFinder output from all 47 species
Pp3c4_12690V3.1	EMB2296, Pp3c4_12690	Ribosomal protein L2 family	0.12	OrthoFinder output from all 47 species
Pp3c4_12720V3.1	EMB2296, Pp3c4_12720	Ribosomal protein L2 family	0.12	OrthoFinder output from all 47 species
Ppi_g33659	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ppi_g60464	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g13695	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g13696	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Smo170971	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Solyc07g063890.2.1	Solyc07g063890	component RPL8 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Solyc12g005330.2.1	Solyc12g005330	component RPL8 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Spa_g30832	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Spa_g39107	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Spa_g52209	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Zm00001e002931_P001	EMB2296, Zm00001e002931	component RPL8 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Zm00001e018178_P001	EMB2296, Zm00001e018178	component RPL8 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e033350_P001	EMB2296, Zm00001e033350	component RPL8 of LSU proteome component	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000347	THO complex	IEP	HCCA
CC	GO:0000445	THO complex part of transcription export complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022666	Rbsml_prot_L2_RNA-bd_dom	14	90
IPR022669	Ribosomal_L2_C	98	225

External Links

No external refs found!

Tin_g00494

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation