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  5. Tin_g00301

Tin_g00301


Description : E3 ubiquiTin ligase *(AIRP1) & original description: none


Gene families : OG0000856 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00301

Target Alias Description ECC score Gene Family Method Actions
AT1G69085 No alias No description available 0.02 OrthoFinder output from all 47 species
AT4G23450 AtAIRP1, AIRP1 RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Ehy_g08209 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_15374 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc02g089240.3.1 Solyc02g089240 E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e004969_P001 Zm00001e004969 E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e012916_P001 RHB1A, Zm00001e012916 Probable E3 ubiquitin-protein ligase RHB1A... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 112 153
No external refs found!