Pir_g52907 (VGD1)

Aliases : VGD1

Description : not classified & original description: none

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g52907
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
Aop_g21986	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.05G030500.1	Ceric.05G030500	pectin methylesterase & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.13G037100.1	Ceric.13G037100	not classified & original description: pacid=50635930...	0.05	OrthoFinder output from all 47 species
Ceric.26G016900.1	Ceric.26G016900	pectin methylesterase & original description:...	0.04	OrthoFinder output from all 47 species
MA_10428610g0010	No alias	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Mp1g17560.1	No alias	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Msp_g44845	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g31349	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g18465	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g49832	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09186	No alias	pectin methylesterase & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	83	127

External Links

No external refs found!