1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g33558

Pir_g33558 (AtRLP54, RLP54)


Aliases : AtRLP54, RLP54

Description : not classified & original description: none


Gene families : OG0004154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004154_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g33558

Target Alias Description ECC score Gene Family Method Actions
AT1G47890 RLP7, AtRLP7 receptor like protein 7 0.02 OrthoFinder output from all 47 species
AT2G15080 RLP19, AtRLP19 receptor like protein 19 0.02 OrthoFinder output from all 47 species
AT2G25440 AtRLP20, RLP20 receptor like protein 20 0.04 OrthoFinder output from all 47 species
AT3G05370 RLP31, AtRLP31 receptor like protein 31 0.03 OrthoFinder output from all 47 species
AT3G05660 RLP33, AtRLP33 receptor like protein 33 0.02 OrthoFinder output from all 47 species
AT3G11010 RLP34, AtRLP34 receptor like protein 34 0.03 OrthoFinder output from all 47 species
AT3G23120 AtRLP38, RLP38 receptor like protein 38 0.03 OrthoFinder output from all 47 species
AT3G24900 AtRLP39, RLP39 receptor like protein 39 0.03 OrthoFinder output from all 47 species
AT3G25010 RLP41, AtRLP41 receptor like protein 41 0.03 OrthoFinder output from all 47 species
AT3G28890 AtRLP43, RLP43 receptor like protein 43 0.03 OrthoFinder output from all 47 species
AT4G13820 No alias Leucine-rich repeat (LRR) family protein 0.05 OrthoFinder output from all 47 species
AT5G40170 AtRLP54, RLP54 receptor like protein 54 0.03 OrthoFinder output from all 47 species
GSVIVT01029712001 AtRLP54, RLP54 Receptor-like protein 6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01037158001 RLP32, AtRLP32 Receptor-like protein 30 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Solyc01g098370.1.1 AtRLP6, RLP6,... Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.02 OrthoFinder output from all 47 species
Solyc01g098690.2.1 AtRLP54, RLP54,... no description available(sp|q93yt3|rlp50_arath : 340.0) 0.03 OrthoFinder output from all 47 species
Solyc12g009520.2.1 AtRLP6, RLP6,... Receptor-like protein 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 58 102
IPR001611 Leu-rich_rpt 132 144
IPR001611 Leu-rich_rpt 702 757
IPR001611 Leu-rich_rpt 287 345
IPR001611 Leu-rich_rpt 382 444
No external refs found!