1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g29913

Pir_g29913


Description : regulatory E3 ubiquitin ligase (APD) involved in gametogenesis & original description: none


Gene families : OG0001688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001688_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g29913

Target Alias Description ECC score Gene Family Method Actions
Aob_g03435 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.03 OrthoFinder output from all 47 species
LOC_Os05g44550.1 LOC_Os05g44550 no description available(sp|q6dbh0|apd2_arath : 110.0) 0.03 OrthoFinder output from all 47 species
Spa_g04378 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.04 OrthoFinder output from all 47 species
Tin_g10529 No alias regulatory E3 ubiquiTin ligase (APD) involved in... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032010 APD1-4_M 3 47
No external refs found!