1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g25307

Pir_g25307 (PPR596)


Aliases : PPR596

Description : RNA editing factor *(POCO) & original description: none


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g25307

Target Alias Description ECC score Gene Family Method Actions
Adi_g055159 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32967 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09907 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11231 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75398 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
LOC_Os01g19529.1 LOC_Os01g19529 Pentatricopeptide repeat-containing protein At1g02370,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35760.2 LOC_Os10g35760 Pentatricopeptide repeat-containing protein At2g20710,... 0.02 OrthoFinder output from all 47 species
Lfl_g07782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09807 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 591 613
IPR002885 Pentatricopeptide_repeat 557 583
IPR002885 Pentatricopeptide_repeat 522 544
IPR002885 Pentatricopeptide_repeat 631 659
IPR002885 Pentatricopeptide_repeat 401 456
No external refs found!