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  5. Pir_g23868

Pir_g23868


Description : not classified & original description: none


Gene families : OG0000221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g23868
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT1G01550 BPS1 Protein of unknown function (DUF793) 0.03 OrthoFinder output from all 47 species
AT1G18740 No alias Protein of unknown function (DUF793) 0.04 OrthoFinder output from all 47 species
AT1G74450 No alias Protein of unknown function (DUF793) 0.03 OrthoFinder output from all 47 species
AT4G01360 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 OrthoFinder output from all 47 species
Aspi01Gene28412.t1 BPS1, Aspi01Gene28412 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68473.t1 Aspi01Gene68473 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g06440.1 LOC_Os11g06440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10434246g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_575g0010 No alias UPF0496 protein 4 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Nbi_g16018 BPS1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g104660.3.1 Solyc01g104660 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc04g071480.1.1 Solyc04g071480 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g18331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004370_P001 Zm00001e004370 UPF0496 protein 4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030410 nicotianamine synthase activity IEP HCCA
BP GO:0030417 nicotianamine metabolic process IEP HCCA
BP GO:0030418 nicotianamine biosynthetic process IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0072351 tricarboxylic acid biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008511 ROH1-like 22 361
No external refs found!