1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g23717

Pir_g23717


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g23717
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Ala_g22192 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06275 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g02665 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47525 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032602001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_37740 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Mp8g15410.1 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g30245 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e017493_P001 Zm00001e017493 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 68 113
IPR022143 DUF3675 119 234
No external refs found!