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  5. Pir_g18963

Pir_g18963


Description : ER tubulae formation factor *(RHD3/RL) & original description: none


Gene families : OG0001619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g18963

Target Alias Description ECC score Gene Family Method Actions
AT3G13870 RHD3 Root hair defective 3 GTP-binding protein (RHD3) 0.02 OrthoFinder output from all 47 species
Ala_g28147 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.05 OrthoFinder output from all 47 species
Als_g40363 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Aob_g02219 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
Aop_g17759 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Cba_g12043 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G037600.1 Ceric.05G037600 ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
Ceric.36G000900.1 Ceric.36G000900 ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Dac_g33613 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g51662 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01016855001 No alias Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os01g39310.1 RHD3, LOC_Os01g39310 ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species
Len_g08736 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g04180 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
MA_10428984g0020 RHD3 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Nbi_g18005 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Ore_g15405 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g13792 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g04644 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Smo73603 RHD3 Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Solyc03g121590.3.1 RHD3, Solyc03g121590 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Zm00001e020502_P002 RHD3, Zm00001e020502 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Zm00001e027781_P001 RHD3, Zm00001e027781 ER tubulae formation factor (RHD3/RL) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR046758 Sey1/RHD3-like_3HB 322 766
No external refs found!