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  5. Pir_g14965

Pir_g14965


Description : not classified & original description: none


Gene families : OG0001722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g14965

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262430 ATFTSH6, FTSH6,... ATP-dependent zinc metalloprotease FTSH 6, chloroplastic... 0.01 OrthoFinder output from all 47 species
AMTR_s00106p00108310 VAR2, FTSH2,... Protein degradation.peptidase families.metallopeptidase... 0.03 OrthoFinder output from all 47 species
AT3G02450 No alias cell division protein ftsH, putative 0.05 OrthoFinder output from all 47 species
Adi_g011418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087057 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Adi_g114970 VAR2, FTSH2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07586 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Aop_g15243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038410 No alias not classified & original description: CDS=51-2204 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.121 FTSH5, VAR1 ATP-dependent zinc metalloprotease FTSH 5, chloroplastic... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021179.74 ATFTSH6, FTSH6 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cre09.g393950 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.02 OrthoFinder output from all 47 species
Cre17.g720050 FTSH8 Protein degradation.peptidase families.metallopeptidase... 0.02 OrthoFinder output from all 47 species
Dac_g10534 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Dcu_g12670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13134 VAR2, FTSH2 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
GSVIVT01020760001 VAR2, FTSH2 Protein degradation.peptidase families.metallopeptidase... 0.04 OrthoFinder output from all 47 species
GSVIVT01036484001 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.04 OrthoFinder output from all 47 species
Msp_g02086 VAR2, FTSH2 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Msp_g07153 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g04179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26838 VAR2, FTSH2 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.03 OrthoFinder output from all 47 species
Solyc03g046340.3.1 Solyc03g046340 component FtsHi of protein translocation ATPase motor complex 0.03 OrthoFinder output from all 47 species
Solyc07g055320.4.1 VAR2, FTSH2,... component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.03 OrthoFinder output from all 47 species
Zm00001e007868_P001 Zm00001e007868 component FtsHi of protein translocation ATPase motor complex 0.03 OrthoFinder output from all 47 species
Zm00001e030358_P003 VAR2, FTSH2,... component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.04 OrthoFinder output from all 47 species
Zm00001e037753_P001 VAR2, FTSH2,... component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 380 508
IPR041569 AAA_lid_3 539 577
No external refs found!