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  5. Pir_g13045

Pir_g13045


Description : scaffold component *(Sec31) of coat protein complex & original description: none


Gene families : OG0003227 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g13045

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00142440 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
AMTR_s00111p00143180 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder output from all 47 species
AMTR_s00111p00143660 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder output from all 47 species
AT3G63460 No alias transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Adi_g011556 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Adi_g011557 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Adi_g057724 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Aev_g07314 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Ala_g22457 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Aob_g15456 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Aop_g12879 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Cba_g13907 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Cba_g56660 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Ceric.02G027200.1 Ceric.02G027200 scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Cre12.g522450 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Dac_g21507 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g03156 No alias scaffold component *(Sec31) of coat protein complex &... 0.08 OrthoFinder output from all 47 species
Dde_g05955 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01001441001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.07 OrthoFinder output from all 47 species
Gb_38895 No alias scaffolding component Sec31 of coat protein complex 0.04 OrthoFinder output from all 47 species
Len_g13782 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Lfl_g04962 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
MA_10435529g0010 No alias scaffolding component Sec31 of coat protein complex 0.03 OrthoFinder output from all 47 species
MA_57417g0010 No alias scaffolding component Sec31 of coat protein complex 0.04 OrthoFinder output from all 47 species
Mp7g09730.1 No alias scaffolding component Sec31 of coat protein complex 0.06 OrthoFinder output from all 47 species
Msp_g15835 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Nbi_g04454 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Ore_g03111 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Ore_g26748 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Ore_g32647 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Ore_g34792 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g32771 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Sam_g25577 No alias scaffold component *(Sec31) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Smo230767 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder output from all 47 species
Solyc01g088020.3.1 Solyc01g088020 scaffolding component Sec31 of coat protein complex 0.07 OrthoFinder output from all 47 species
Tin_g14980 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e010894_P003 Zm00001e010894 scaffolding component Sec31 of coat protein complex 0.06 OrthoFinder output from all 47 species
Zm00001e035747_P003 Zm00001e035747 scaffolding component Sec31 of coat protein complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR024298 ACE1_Sec16_Sec31 581 772
IPR001680 WD40_repeat 120 153
No external refs found!