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  5. Pir_g12626

Pir_g12626


Description : NDX-type transcription factor & original description: none


Gene families : OG0003424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12626

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00031700 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Adi_g011555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02709 No alias NDX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13614 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007857 No alias not classified & original description: CDS=227-2413 0.02 OrthoFinder output from all 47 species
Dcu_g07774 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08164 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14457 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011024001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os05g09630.1 LOC_Os05g09630 transcription factor (NDX) 0.02 OrthoFinder output from all 47 species
Mp1g16560.1 No alias transcription factor (NDX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098533 ATPase dependent transmembrane transport complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!