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  5. Pir_g12515

Pir_g12515


Description : rRNA methyltransferase *(NOP2) & original description: none


Gene families : OG0004210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12515

Target Alias Description ECC score Gene Family Method Actions
AT4G26600 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 OrthoFinder output from all 47 species
AT5G55920 OLI2 S-adenosyl-L-methionine-dependent methyltransferases... 0.04 OrthoFinder output from all 47 species
Ala_g02438 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007898 OLI2 rRNA methyltransferase *(NOP2) & original description: CDS=1-1743 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000114.21 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g273413 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dac_g20948 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014717001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
MA_10427534g0030 No alias OLI2 LSU processome maturation factor 0.05 OrthoFinder output from all 47 species
Mp6g04100.1 No alias OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016553 No alias rRNA methyltransferase *(NOP2) & original description: CDS=1-1836 0.03 OrthoFinder output from all 47 species
Solyc02g079415.1.1 Solyc02g079415 OLI2 LSU processome maturation factor 0.02 OrthoFinder output from all 47 species
Solyc07g052110.4.1 Solyc07g052110 OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 229 439
IPR031341 Methyltr_RsmF_N 137 225
No external refs found!