Pir_g10398

Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex & original description: none

Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g10398

Target	Alias	Description	ECC score	Gene Family Method
AT2G21630	No alias	Sec23/Sec24 protein transport family protein	0.02	OrthoFinder output from all 47 species
Aev_g02536	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Aop_g12783	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Azfi_s0385.g067501	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.15	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.01	OrthoFinder output from all 47 species
LOC_Os09g28610.1	LOC_Os09g28610	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
MA_90063g0010	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
Mp7g12190.1	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
Ore_g25550	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004909	No alias	not classified & original description: CDS=220-537	0.03	OrthoFinder output from all 47 species
Smo107900	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003872	6-phosphofructokinase activity	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006896	Sec23/24_trunk_dom	126	395
IPR012990	Sec23_24_beta_S	406	510
IPR006900	Sec23/24_helical_dom	524	622
IPR007123	Gelsolin-like_dom	637	724
IPR006895	Znf_Sec23_Sec24	59	97

External Links

No external refs found!

Pir_g10398

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation