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  5. Pir_g08578

Pir_g08578


Description : not classified & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g08578
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00144160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
Adi_g018593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aob_g01806 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aob_g02256 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.02 OrthoFinder output from all 47 species
Aop_g12754 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Cba_g74371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre11.g476200 No alias No description available 0.02 OrthoFinder output from all 47 species
Lfl_g16999 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Lfl_g40942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_324587g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g02248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30390 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ore_g38302 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ppi_g02199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000115 No alias platform ATPase CDC48 & original description: CDS=3649-4851 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005344 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sam_g24728 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Solyc06g072720.3.1 Solyc06g072720 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Spa_g15252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09583 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Zm00001e040205_P001 Zm00001e040205 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 129 153
IPR000571 Znf_CCCH 192 213
IPR000571 Znf_CCCH 240 265
No external refs found!