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  5. Pir_g07755

Pir_g07755 (At-RS41, RS41, ATRSP41)


Aliases : At-RS41, RS41, ATRSP41

Description : RNA splicing factor *(RS31/40/41) & original description: none


Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g07755

Target Alias Description ECC score Gene Family Method Actions
AT3G61860 At-RS31, RS31,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT5G52040 At-RS41, RS41, ATRSP41 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g074958 At-RS31, RS31,... RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11731 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04759 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.9 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
LOC_Os04g02870.1 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Lfl_g38725 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10171241g0010 At-RS41, RS41, ATRSP41 RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_187587g0020 At-RS41, RS41, ATRSP41 RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Ore_g26677 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g091750.3.1 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e039070_P001 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 74 136
No external refs found!