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  5. Pir_g05927

Pir_g05927


Description : not classified & original description: none


Gene families : OG0007043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g05927

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00095080 evm_27.TU.AmTr_v1... Cactin OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G03910 No alias EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13... 0.02 OrthoFinder output from all 47 species
Als_g13386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g57675 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G082000.1 Ceric.14G082000 not classified & original description: pacid=50634889... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.13 No alias Cactin OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre09.g398650 No alias Cactin OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os03g58590.1 LOC_Os03g58590 Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 644.0) 0.02 OrthoFinder output from all 47 species
Smo107633 No alias Cactin OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018816 Cactin_central 201 398
IPR019134 Cactin_C 557 681
No external refs found!